A B C D E F G H I K L M N O P R S T U V W X Y Z

A

actionPerformed(ActionEvent) - Method in class ccvisu.ClusterManager.AddPatternOk
 
actionPerformed(ActionEvent) - Method in class ccvisu.ClusterManager.FilterPatternOk
 
addCluster(Cluster) - Method in class ccvisu.WriterDataGraphicsDISP
add a new cluster in the list
addGraphEventListener(GraphEventListener) - Method in class ccvisu.Minimizer
Constructor
addNode(GraphVertex) - Method in class ccvisu.Cluster
add the given node to the cluster
addNode(int, float[], float) - Method in class ccvisu.MinimizerBarnesHut.OctTree
Adds a graph node to the octtree.
addNode2(int, float[], float) - Method in class ccvisu.MinimizerBarnesHut.OctTree
Adds a graph node to the octtree, without changing the position and weight of the root.
addNodeByIndex(int) - Method in class ccvisu.Cluster
add the node that corresponds to the index-th node in graph(GraphData)
addNodeByIndex_WO_COLOR(int) - Method in class ccvisu.Cluster
add the node that corresponds to the index-th node in graph(GraphData) without changing his color function used only to assign to default cluster at begining
addPattern(String, int) - Method in class ccvisu.Cluster
adds nodes to a cluster in function of a given pattern
addRepulsionDir(int, MinimizerBarnesHut.OctTree, float[]) - Method in class ccvisu.MinimizerBarnesHut
Computes the direction of the repulsion force from the tree on the specified node.
allNodes - Variable in class ccvisu.ClusterManager
 
analyzeDistances() - Method in class ccvisu.MinimizerBarnesHut
Computes and outputs some statistics.
anim - Variable in class ccvisu.CCVisuGUI
 
annot - Variable in class ccvisu.CCVisuGUI
 
area - Variable in class ccvisu.WriterDataGraphicsDISP
 
attrExp - Variable in class ccvisu.CCVisuGUI
 
attrExponent - Variable in class ccvisu.MinimizerBarnesHut
Exponent of the Euclidean distance in the attraction energy.
attrIndexes - Variable in class ccvisu.MinimizerBarnesHut
Node indexes of the similarity lists.
attrValues - Variable in class ccvisu.MinimizerBarnesHut
Similarity values of the similarity lists.
averageRadius - Variable in class ccvisu.Cluster
 

B

backColor - Variable in class ccvisu.CCVisuGUI
 
backColor - Variable in class ccvisu.WriterDataGraphics
 
baryCenter - Variable in class ccvisu.MinimizerBarnesHut
Position of the barycenter of the nodes.
black - Static variable in class ccvisu.CCVisu
 
blackCircle - Variable in class ccvisu.CCVisuGUI
 
blackCircle - Variable in class ccvisu.WriterDataGraphics
 
blue - Static variable in class ccvisu.CCVisu
 
browser - Variable in class ccvisu.WriterDataGraphicsDISP
 
buildOctTree() - Method in class ccvisu.MinimizerBarnesHut
Builds the octtree.

C

canvas - Variable in class ccvisu.ScreenDisplay
Canvas for graphics.
ccvisu - package ccvisu
 
CCVisu - Class in ccvisu
Main class of the CCVisu package.
CCVisu() - Constructor for class ccvisu.CCVisu
 
CCVisuGUI - Class in ccvisu
GUI for those who don't like command line
CCVisuGUI(int, String, int, String, int, int, String, int, int, boolean, boolean, float, int, boolean, float, int, String, boolean, float, boolean, boolean, boolean) - Constructor for class ccvisu.CCVisuGUI
Constructor with parameters
changed - Variable in class ccvisu.Cluster
true if needs to recompute radius, center,...
children - Variable in class ccvisu.MinimizerBarnesHut.OctTree
Children of this tree node.
chkAvail(String[], int) - Static method in class ccvisu.CCVisu
Checks whether the command line argument at index i has a follower argument.
chocolate4 - Static variable in class ccvisu.CCVisu
 
chosenColor - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
cltNodes - Variable in class ccvisu.ClusterManager
 
Cluster - Class in ccvisu
A class with a list of nodes that compute some informations on them
Cluster(String) - Constructor for class ccvisu.Cluster
Contructor
Cluster(String, Color) - Constructor for class ccvisu.Cluster
Constructor
ClusterManager - Class in ccvisu
a GUI to manage the clusters define new, remove, ...
ClusterManager(ScreenDisplay, WriterDataGraphicsDISP) - Constructor for class ccvisu.ClusterManager
Constructor
ClusterManager.AddPatternOk - Class in ccvisu
 
ClusterManager.AddPatternOk() - Constructor for class ccvisu.ClusterManager.AddPatternOk
 
ClusterManager.FilterPatternOk - Class in ccvisu
 
ClusterManager.FilterPatternOk() - Constructor for class ccvisu.ClusterManager.FilterPatternOk
 
ClusterReaderWriter - Class in ccvisu
A class that save and load clusters' informations in WriterDataGraphicsDISP
ClusterReaderWriter() - Constructor for class ccvisu.ClusterReaderWriter
 
clusters - Variable in class ccvisu.ScreenDisplay
part in charge of managing the clusters
clusters - Variable in class ccvisu.WriterDataGraphicsDISP
 
color - Variable in class ccvisu.Cluster
color of the cluster
color - Variable in class ccvisu.ClusterManager
to choose the color to display
color - Variable in class ccvisu.GraphVertex
 
color - Variable in class ccvisu.MarkerScript.ColorCondition
 
colorChoice - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
compareTo(Object) - Method in class ccvisu.ReaderDataGraphCVS.Revision
Compares this revision with the specified object for order.
compute() - Method in class ccvisu.Cluster
compute the informations provided by the cluster
computeBaryCenter() - Method in class ccvisu.MinimizerBarnesHut
Computes the position of the barycenter baryCenter of all nodes.
computeLayout(GraphData, int, float, float, boolean, boolean, float, GraphData, boolean, GraphEventListener) - Static method in class ccvisu.CCVisu
Compute layout for a given graph.
computeRepuFactor() - Method in class ccvisu.MinimizerBarnesHut
Computes the factor for repulsion forces repuFactor such that in the energy minimum the average Euclidean distance between pairs of nodes with similarity 1.0 is approximately 1.
conditions - Variable in class ccvisu.MarkerScript
 
CONTAINS - Static variable in class ccvisu.Cluster
used as mode for the method addPattern
contains - Static variable in class ccvisu.MarkerScript
 
CONTAINS - Static variable in class ccvisu.MarkerScript
used as mode for pattern interpretation
createCVSOptions(int) - Method in class ccvisu.CCVisuGUI
construct the panel for the CVS options
createDISPOptions(boolean, float, int, String, boolean, float, boolean, boolean, boolean) - Method in class ccvisu.CCVisuGUI
construct the panel for the display options
createFilenameFilter() - Method in class ccvisu.CCVisuGUI
 
createMinimizerOptions(int, int, String, int, int, boolean, boolean, float) - Method in class ccvisu.CCVisuGUI
construct the panel for the minimizer options
curClt - Variable in class ccvisu.ClusterManager
cluster curently edited
CVS - Static variable in class ccvisu.CCVisu
CVS log format (only input).
CVSFilter - Variable in class ccvisu.CCVisuGUI
 
CVSOptions - Variable in class ccvisu.CCVisuGUI
 
cyan - Static variable in class ccvisu.CCVisu
 

D

darkCyan - Static variable in class ccvisu.CCVisu
 
darkGray - Static variable in class ccvisu.CCVisu
 
darkMagenta - Static variable in class ccvisu.CCVisu
 
darkOliveGreen4 - Static variable in class ccvisu.CCVisu
 
darkYellow - Static variable in class ccvisu.CCVisu
 
def - Variable in class ccvisu.MarkerScript
 
defaultColor - Variable in class ccvisu.MarkerScript
 
defaultVisible - Variable in class ccvisu.ClusterManager
to choose if the default cluster should be diplayed
degree - Variable in class ccvisu.GraphVertex
(Weighted) Edge degree of the vertex.
diag - Variable in class ccvisu.ClusterManager
 
diag2 - Variable in class ccvisu.ClusterManager
 
dim - Variable in class ccvisu.CCVisuGUI
 
DISP - Static variable in class ccvisu.CCVisu
Display graph layout on screen (only output).
display - Variable in class ccvisu.ClusterManager
notify when significant changes are done
display - Variable in class ccvisu.WriterDataGraphicsDISP
 
DISPOptions - Variable in class ccvisu.CCVisuGUI
 
down - Variable in class ccvisu.ClusterManager
to change the position of a cluster in the rendering order

E

edgeAnnot - Variable in class ccvisu.WriterDataGraphicsDISP
 
edgeMap - Variable in class ccvisu.WriterDataGraphicsDISP
 
edgeNumber - Variable in class ccvisu.WriterDataGraphicsSVG
used to build uniq id for the edges
edges - Variable in class ccvisu.GraphData
Edges of type GraphEdgeInt.
edgesCheck - Variable in class ccvisu.ScreenDisplay
 
editCluster - Variable in class ccvisu.ClusterManager
to edit a cluster
editDialog(Cluster) - Method in class ccvisu.ClusterManager
create a dialog to edit the cluster
enableCVSOptions(boolean) - Method in class ccvisu.CCVisuGUI
en/disable the part concerning CVS
enableDISPOptions(boolean) - Method in class ccvisu.CCVisuGUI
en/disable the part concerning the display
enableMinimizerOptions(boolean) - Method in class ccvisu.CCVisuGUI
en/disable the part concerning the minimizer
enableSVGOptions(boolean) - Method in class ccvisu.CCVisuGUI
en/disable the part concerning SVG and VRML format
endl - Static variable in class ccvisu.CCVisu
End of line.
endl - Static variable in class ccvisu.ReaderDataGraph
End of line.
endl - Static variable in class ccvisu.WriterData
End of line.
ENDS - Static variable in class ccvisu.Cluster
used as mode for the method addPattern
ends - Static variable in class ccvisu.MarkerScript
 
ENDS - Static variable in class ccvisu.MarkerScript
used as mode for pattern interpretation
EQUALS - Static variable in class ccvisu.Cluster
used as mode for the method addPattern
equals - Static variable in class ccvisu.MarkerScript
 
EQUALS - Static variable in class ccvisu.MarkerScript
used as mode for pattern interpretation
equals(Object) - Method in class ccvisu.ReaderDataGraphCVS.Revision
Compares the specified object with this revision for equality.
exec - Variable in class ccvisu.CCVisuGUI
validate choices and execute

F

filename - Variable in class ccvisu.ReaderDataGraphCVS.Revision
 
filter(String, int, boolean) - Method in class ccvisu.Cluster
 
fixedPos - Variable in class ccvisu.MinimizerBarnesHut
The minimizer does not change the position for nodes with entry true.
fontSize - Variable in class ccvisu.CCVisuGUI
 
fontSize - Variable in class ccvisu.WriterDataGraphics
 
fontSizeChoice - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
FORMAT - Static variable in class ccvisu.CCVisuGUI
 

G

getAverageRadius() - Method in class ccvisu.Cluster
 
getBlackCircle() - Method in class ccvisu.WriterDataGraphicsDISP
return true if black circles are drawn
getChosenColor() - Method in class ccvisu.ScreenDisplay
nomral vertex color
getCluster(int) - Method in class ccvisu.WriterDataGraphicsDISP
return the cluster at the specified index
getCluster(String) - Method in class ccvisu.WriterDataGraphicsDISP
return the cluster with the specified name
getClusterFromListIndex(int) - Method in class ccvisu.ClusterManager
return a cluster in function of an integer
getColor() - Method in class ccvisu.Cluster
 
getDirection(int, float[]) - Method in class ccvisu.MinimizerBarnesHut
Computes the direction of the total force acting on the specified node.
getDisplay() - Method in class ccvisu.WriterDataGraphicsDISP
 
getDist(float[], float[]) - Method in class ccvisu.MinimizerBarnesHut
Returns the Euclidean distance between the specified positions.
getDistToBaryCenter(int) - Method in class ccvisu.MinimizerBarnesHut
Returns the Euclidean distance between node i and the baryCenter.
getEnergy(int) - Method in class ccvisu.MinimizerBarnesHut
Returns the energy of the specified node.
getFormat(String) - Static method in class ccvisu.CCVisu
Transforms the format given as a string into the appropriate integer value.
getGraphData() - Method in class ccvisu.WriterDataGraphicsDISP
 
getHideSource() - Static method in class ccvisu.CCVisu
Get value of option hideSource.
getName() - Method in class ccvisu.Cluster
 
getNames(Point) - Method in class ccvisu.WriterDataGraphicsDISP
Compute list of names of the vertices and edges at the given position.
getNbOfCluster() - Method in class ccvisu.WriterDataGraphicsDISP
get the number of cluster
getNode(int) - Method in class ccvisu.Cluster
return the i-th element of the Cluster this method's purpose is to easily iterate on each node of the cluster
getRepulsionEnergy(int, MinimizerBarnesHut.OctTree) - Method in class ccvisu.MinimizerBarnesHut
Returns the repulsion energy between the node with the specified index and the nodes in the octtree.
getshowEdges() - Method in class ccvisu.WriterDataGraphicsDISP
get showEdges
getVerbosityLevel() - Static method in class ccvisu.CCVisu
Get value of option verbosityLevel.
getWriteColor() - Method in class ccvisu.WriterDataGraphicsDISP
the color of the text
getX() - Method in class ccvisu.Cluster
return the x-coordinate of the barycenter
getY() - Method in class ccvisu.Cluster
return the y-coordinate of the barycenter
getZ() - Method in class ccvisu.Cluster
return the z-coordinate of the barycenter
graph - Static variable in class ccvisu.Cluster
pointer to the data
graph - Variable in class ccvisu.WriterData
Graph representation.
graphchanged() - Method in class ccvisu.Cluster
tells the cluster to recompute its informations
GraphData - Class in ccvisu
Contains the representation of a graph.
GraphData() - Constructor for class ccvisu.GraphData
Constructor.
GraphEdgeInt - Class in ccvisu
Represents an edge between two vertices x and y (given as vertex ids) of weight w.
GraphEdgeInt() - Constructor for class ccvisu.GraphEdgeInt
 
GraphEdgeString - Class in ccvisu
Represents an edge between two vertices x and y (given as vertex names) of weight w (also String).
GraphEdgeString() - Constructor for class ccvisu.GraphEdgeString
 
GraphEvent - Class in ccvisu
An Event class to notify that chages on the graph where made used by Minimizer and/or subclasses
GraphEvent(Object) - Constructor for class ccvisu.GraphEvent
Constructor
GraphEventListener - Interface in ccvisu
Interface for classes that receive GraphEvent (i.e.
GraphVertex - Class in ccvisu
Represents a vertex of the graph, including name, id, and several attributes.
GraphVertex() - Constructor for class ccvisu.GraphVertex
Constructor.
grav - Variable in class ccvisu.CCVisuGUI
 
gravitationFactor - Variable in class ccvisu.MinimizerBarnesHut
Factor for the gravitation energy (attraction to the barycenter), 0.0f for no gravitation.
gray - Static variable in class ccvisu.CCVisu
 
green - Static variable in class ccvisu.CCVisu
 
guessBrowser(String) - Method in class ccvisu.WriterDataGraphicsDISP
 

H

hideAllLabels() - Method in class ccvisu.WriterDataGraphicsDISP
Hide all labels (vertice names).
hideLabel - Variable in class ccvisu.ClusterManager
to choose if the cluster's nodes should be hidden
hideSource - Static variable in class ccvisu.CCVisu
Global options
hideSource - Variable in class ccvisu.CCVisuGUI
 

I

id - Variable in class ccvisu.GraphVertex
 
img - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
in - Variable in class ccvisu.ReaderData
Input stream reader object.
index - Variable in class ccvisu.MinimizerBarnesHut.OctTree
For leafs, the unique index of the graph node; for non-leafs -1.
indexToCltName - Static variable in class ccvisu.Cluster
contain the name of node's cluster
inFile - Variable in class ccvisu.CCVisuGUI
textfield to enter the input file
info - Variable in class ccvisu.Cluster
used to know if the circle and cross should be drawn
inFormat - Variable in class ccvisu.CCVisuGUI
a choice for the input format
infoVisible - Variable in class ccvisu.ClusterManager
to choose if the cluster's info should be diplayed
init(WriterDataGraphicsDISP, GraphData) - Static method in class ccvisu.Cluster
initialize Data common to all clusters
initializeLayout(GraphData, int, GraphData) - Static method in class ccvisu.CCVisu
Compute randomized initial layout for a given graph with the given number of dimensions.
initLayout - Variable in class ccvisu.CCVisuGUI
 
inputName - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
inputName - Variable in class ccvisu.WriterDataGraphicsSVG
 
insetbottom - Variable in class ccvisu.WriterDataGraphicsDISP
 
insetleft - Variable in class ccvisu.WriterDataGraphicsDISP
 
intputDialog() - Method in class ccvisu.ClusterManager
create a dialog that asks the user for a name and create a new cluster
isshowEdgesPossible() - Method in class ccvisu.WriterDataGraphicsDISP
get showEdges
isSource - Variable in class ccvisu.GraphVertex
True if the vertex is the source vertex of an edge.
iter - Variable in class ccvisu.CCVisuGUI
 
Iterator() - Method in class ccvisu.Cluster
return an iterator on the index of the cluster's nodes

K

keyPressed(KeyEvent) - Method in class ccvisu.ClusterManager.AddPatternOk
 
keyPressed(KeyEvent) - Method in class ccvisu.ClusterManager.FilterPatternOk
 

L

LAY - Static variable in class ccvisu.CCVisu
Graph layout in textual format.
layFilter - Variable in class ccvisu.CCVisuGUI
 
lightBlue - Static variable in class ccvisu.CCVisu
 
lightGray - Static variable in class ccvisu.CCVisu
 
lightGreen - Static variable in class ccvisu.CCVisu
 
lightRed - Static variable in class ccvisu.CCVisu
 
listener - Variable in class ccvisu.Minimizer
when chages occur in the graph
load - Variable in class ccvisu.ClusterManager
load clusters
loadButton - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
loadClt() - Method in class ccvisu.ClusterManager
Create a fileDialog and try to load the info from the selected file Callback method
loadDialog() - Method in class ccvisu.CCVisuGUI
dialog to select a file to load
loadInFile - Variable in class ccvisu.CCVisuGUI
 
loadInitlayDialog() - Method in class ccvisu.CCVisuGUI
dialog to select the initial layout
loadInitLayout - Variable in class ccvisu.CCVisuGUI
 
loadOtherFile(boolean) - Method in class ccvisu.ScreenDisplay
Load next/previous layout from file, to leaf through the directory file by file.
logmsg - Variable in class ccvisu.ReaderDataGraphCVS.Revision
 
lst - Variable in class ccvisu.ClusterManager
what display the cluster's names

M

magenta - Static variable in class ccvisu.CCVisu
 
main(String[]) - Static method in class ccvisu.CCVisu
Main program.
main(String[]) - Static method in class ccvisu.CCVisuGUI
 
mark(Marker, GraphData) - Static method in class ccvisu.CCVisu
Highlight nodes
mark(GraphVertex) - Method in class ccvisu.Marker
Special marking for certain vertices by setting attributes of the vertex, e.g., color and showName.
mark(GraphVertex) - Method in class ccvisu.MarkerExp
Special marking for certain vertices by setting attributes of the vertex, e.g., color and showName.
mark(GraphVertex) - Method in class ccvisu.MarkerScript
Special marking for certain vertices by setting attributes of the vertex
marker - Static variable in class ccvisu.CCVisu
 
Marker - Class in ccvisu
Marks a given vertex under certain conditions.
Marker() - Constructor for class ccvisu.Marker
Constructor.
MarkerExp - Class in ccvisu
Marks a given vertex under certain conditions.
MarkerExp() - Constructor for class ccvisu.MarkerExp
Constructor.
markerRegExTextField - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
MarkerScript - Class in ccvisu
Parse conditions from a file and marks a vertices verifing these conditions.
MarkerScript(BufferedReader) - Constructor for class ccvisu.MarkerScript
Constructor
MarkerScript.ColorCondition - Class in ccvisu
Objects containing a color and a list of conditions
MarkerScript.ColorCondition(Color) - Constructor for class ccvisu.MarkerScript.ColorCondition
Constructor
markVertices(String) - Method in class ccvisu.WriterDataGraphicsDISP
Marks all vertices whose node names match the given regular expression.
maxPos - Variable in class ccvisu.MinimizerBarnesHut.OctTree
Maximum coordinates of the cuboid in each of the 3 dimensions.
minimizeEnergy(int) - Method in class ccvisu.Minimizer
Minimizes iteratively the energy using the Barnes-Hut algorithm.
minimizeEnergy(int) - Method in class ccvisu.MinimizerBarnesHut
Iteratively minimizes energy using the Barnes-Hut algorithm.
Minimizer - Class in ccvisu
Minimizer for a given energy model, which is set by the constructor of the concrete minimizer implementation.
Minimizer() - Constructor for class ccvisu.Minimizer
 
MinimizerBarnesHut - Class in ccvisu
Minimizer for the (weighted) (edge-repulsion) LinLog energy model, based on the Barnes-Hut algorithm.
MinimizerBarnesHut(int, int[][], float[][], float[], float[][], boolean[], float, float, float) - Constructor for class ccvisu.MinimizerBarnesHut
Sets the number of nodes, the similarity matrices (edge weights), and the position matrix.
MinimizerBarnesHut.OctTree - Class in ccvisu
Octtree for graph nodes with positions in 3D space.
MinimizerBarnesHut.OctTree(int, float[], float, float[], float[]) - Constructor for class ccvisu.MinimizerBarnesHut.OctTree
Creates an octtree containing one graph node.
MinimizerOptions - Variable in class ccvisu.CCVisuGUI
 
minPos - Variable in class ccvisu.MinimizerBarnesHut.OctTree
Minimum coordinates of the cuboid in each of the 3 dimensions.
minVert - Variable in class ccvisu.CCVisuGUI
 
minVert - Variable in class ccvisu.WriterDataGraphics
 
minVertChoice - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
mode - Variable in class ccvisu.ClusterManager
 
mode - Variable in class ccvisu.MarkerScript.ColorCondition
 
mode2 - Variable in class ccvisu.ClusterManager
 
mouseX - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
mouseY - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
moveClusterDown(int) - Method in class ccvisu.WriterDataGraphicsDISP
move the cluster at index one place lower in the list => drawn later (more on top)
moveClusterUp(int) - Method in class ccvisu.WriterDataGraphicsDISP
move the cluster at index one place higher in the list => cluster drawn sooner
moveNode(float[], float[], float) - Method in class ccvisu.MinimizerBarnesHut.OctTree
Updates the positions of the octtree nodes when the position of a graph node has changed.

N

name - Variable in class ccvisu.Cluster
name of the cluster
name - Variable in class ccvisu.GraphVertex
 
nameToVertex - Variable in class ccvisu.GraphData
Maps a vertex name to a GraphVertex.
newCluster - Variable in class ccvisu.ClusterManager
to add a new cluster
nodeNr - Variable in class ccvisu.MinimizerBarnesHut
Number of nodes.
nodes - Variable in class ccvisu.Cluster
list of int representing the index of nodes in the GraphData
NOT_CONTAINS - Static variable in class ccvisu.MarkerScript
used as mode for pattern interpretation
NOT_ENDS - Static variable in class ccvisu.MarkerScript
used as mode for pattern interpretation
NOT_EQUALS - Static variable in class ccvisu.MarkerScript
used as mode for pattern interpretation
NOT_STARTS - Static variable in class ccvisu.MarkerScript
used as mode for pattern interpretation
noWeight - Variable in class ccvisu.CCVisuGUI
 
numberOfNode - Variable in class ccvisu.ClusterManager
display informations

O

octTree - Variable in class ccvisu.MinimizerBarnesHut
Octtree for repulsion computation.
onGraphEvent(GraphEvent) - Method in interface ccvisu.GraphEventListener
 
onGraphEvent(GraphEvent) - Method in class ccvisu.ScreenDisplay
repaint when the graph change
openURL - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
openURL - Variable in class ccvisu.WriterDataGraphics
 
openURL(Point) - Method in class ccvisu.WriterDataGraphicsDISP
Open the name of what is under the cursor as if it is an URL.
orange - Static variable in class ccvisu.CCVisu
 
out - Variable in class ccvisu.WriterDataGraphicsSVG
 
out - Variable in class ccvisu.WriterDataGraphicsVRML
 
out - Variable in class ccvisu.WriterDataLAY
 
out - Variable in class ccvisu.WriterDataRSF
 
outFile - Variable in class ccvisu.CCVisuGUI
textfield to enter the output file (when needed)
outFormat - Variable in class ccvisu.CCVisuGUI
a choice for the output format

P

paint(Graphics) - Method in class ccvisu.ScreenDisplay.MyCanvas
Draws the layout layout on the screen.
parent - Variable in class ccvisu.ClusterManager
where the clusters are stocked
parent - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
parseDate(String) - Method in class ccvisu.ReaderDataGraphCVS
Parses the date entry.
pattern - Variable in class ccvisu.MarkerScript.ColorCondition
 
pink - Static variable in class ccvisu.CCVisu
 
pos - Variable in class ccvisu.GraphData
Layout.
pos - Variable in class ccvisu.MinimizerBarnesHut
Position in 3-dimensional space for every node.
pos - Variable in class ccvisu.ReaderDataLAY.LayoutEntry
 
position - Variable in class ccvisu.MinimizerBarnesHut.OctTree
Barycenter of the contained graph nodes.
printHelp() - Static method in class ccvisu.CCVisu
Prints usage information.
printVersion() - Static method in class ccvisu.CCVisu
Prints version information.
process() - Method in class ccvisu.ClusterManager.AddPatternOk
 
process() - Method in class ccvisu.ClusterManager.FilterPatternOk
 

R

radius - Variable in class ccvisu.ClusterManager
display informations
read(BufferedReader, WriterDataGraphicsDISP) - Static method in class ccvisu.ClusterReaderWriter
read from a stream, build the clusters and pt them in the Writer...DISP
read(GraphData) - Method in class ccvisu.ReaderData
Reads the graph or layout data from stream reader in.
read(GraphData) - Method in class ccvisu.ReaderDataGraph
Reads the graph data from stream reader in.
read(GraphData) - Method in class ccvisu.ReaderDataLAY
Reads the layout data from stream reader in, in text format LAY.
readEdges() - Method in class ccvisu.ReaderDataGraph
Reads the edges of a graph from stream reader in, and stores them in a list (of GraphEdgeString elements).
readEdges() - Method in class ccvisu.ReaderDataGraphCVS
Reads the edges of a graph in CVS log format from stream reader in, and stores them in a list (of GraphEdgeString elements).
readEdges() - Method in class ccvisu.ReaderDataGraphRSF
Reads the edges of a graph in RSF (relational standard format) from stream reader in, and stores them in a list (of GraphEdgeString elements).
readEntry(StringTokenizer) - Method in class ccvisu.ReaderDataGraphRSF
 
ReaderData - Class in ccvisu
Reader for input data.
ReaderData(BufferedReader) - Constructor for class ccvisu.ReaderData
Constructor.
ReaderDataGraph - Class in ccvisu
Reader for input graphs.
ReaderDataGraph(BufferedReader) - Constructor for class ccvisu.ReaderDataGraph
Constructor.
ReaderDataGraphCVS - Class in ccvisu
Reader for CVS log files.
ReaderDataGraphCVS(BufferedReader, int) - Constructor for class ccvisu.ReaderDataGraphCVS
Constructor.
ReaderDataGraphCVS(BufferedReader, int, boolean) - Constructor for class ccvisu.ReaderDataGraphCVS
Constructor.
ReaderDataGraphCVS.Revision - Class in ccvisu
Represents a CVS revision entry (an abstraction of it).
ReaderDataGraphCVS.Revision() - Constructor for class ccvisu.ReaderDataGraphCVS.Revision
 
ReaderDataGraphRSF - Class in ccvisu
Reader for co-change graphs in RSF format.
ReaderDataGraphRSF(BufferedReader) - Constructor for class ccvisu.ReaderDataGraphRSF
Constructor.
ReaderDataLAY - Class in ccvisu
Reader for layouts in text format.
ReaderDataLAY(BufferedReader) - Constructor for class ccvisu.ReaderDataLAY
Constructor.
ReaderDataLAY.LayoutEntry - Class in ccvisu
 
ReaderDataLAY.LayoutEntry() - Constructor for class ccvisu.ReaderDataLAY.LayoutEntry
 
readGraph(GraphData, Vector) - Static method in class ccvisu.ReaderDataGraph
Reads the graph data from list of string edges (see class comment).
readRevisionList() - Method in class ccvisu.ReaderDataGraphCVS
Parses the CVS log data and extracts revisions.
recoverTransactions(Vector<ReaderDataGraphCVS.Revision>) - Method in class ccvisu.ReaderDataGraphCVS
Recovers the change transactions for the co-change graph from the revision information, i.e., it assignes the transaction ids for the revisions.
rectBottomRight - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
rectShow - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
rectTopLeft - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
red - Static variable in class ccvisu.CCVisu
 
refresh() - Method in class ccvisu.ClusterManager
refresh the list of clusters and closes the dialogs (edit,new,...) method invoqued by ScreenDisplay
refresh() - Method in class ccvisu.ScreenDisplay
tells the clusterManager to refresh its list of clusters and ...
refreshCltNodes() - Method in class ccvisu.ClusterManager
refresh the list that contains the nodes of the current cluster
refreshCluster() - Method in class ccvisu.WriterDataGraphicsDISP
tells the cluster that the graph has changed => recompute some data
refreshInfo() - Method in class ccvisu.ClusterManager
refresh the informations of the selected cluster
refreshList() - Method in class ccvisu.ClusterManager
refresh the list that contains the clusters WARNING: the order of the list is the inverse of the groups order
relName - Variable in class ccvisu.GraphEdgeInt
The name of the relation the egde belongs to
relName - Variable in class ccvisu.GraphEdgeString
The name of the relation the egde belongs to
relName - Variable in class ccvisu.ReaderDataGraphCVS.Revision
 
removeCluster - Variable in class ccvisu.ClusterManager
to remove a cluster
removeCluster(int) - Method in class ccvisu.WriterDataGraphicsDISP
remove the cluster at the specified index
removeNode(GraphVertex) - Method in class ccvisu.Cluster
remove from cluster the given node
removeNodeByIndex(int) - Method in class ccvisu.Cluster
remove the node that corresponds to the index-th node in graph(GraphData)
repaint() - Method in class ccvisu.ScreenDisplay.MyCanvas
override standart => no more flickering
repaint() - Method in class ccvisu.ScreenDisplay
Repaint the drawing on the frame, i.e., deligate to canvas.
repu - Variable in class ccvisu.MinimizerBarnesHut
Repulsion vector.
repuExp - Variable in class ccvisu.CCVisuGUI
 
repuExponent - Variable in class ccvisu.MinimizerBarnesHut
Exponent of the Euclidean distance in the repulsion energy.
repuFactor - Variable in class ccvisu.MinimizerBarnesHut
Factor for repulsion energy that normalizes average distance between pairs of nodes with maximum similarity to (roughly) 1.
repuStrategy - Static variable in class ccvisu.MinimizerBarnesHut
Factors for the repulsion force for pulsing.
resetRestriction() - Method in class ccvisu.WriterDataGraphicsDISP
Reset vertice restriction that was set by restrictShowedVertices.
restrictShowedVertices(Point, Point) - Method in class ccvisu.WriterDataGraphicsDISP
Restrict the set of vertices displayed on the screen to the vertices within the given rectangular (i.e., zoom).
RSF - Static variable in class ccvisu.CCVisu
Graph (relation) in relational standard format.
rsfFilter - Variable in class ccvisu.CCVisuGUI
 

S

save - Variable in class ccvisu.ClusterManager
save clusters
saveButton - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
saveClt() - Method in class ccvisu.ClusterManager
Create a fileDialog and save the info in the selected file Callback method
saveDialog() - Method in class ccvisu.CCVisuGUI
dialog to select an output file
saveOutFile - Variable in class ccvisu.CCVisuGUI
 
scale - Variable in class ccvisu.CCVisuGUI
 
scalePos - Variable in class ccvisu.WriterDataGraphicsSVG
 
scalePos - Variable in class ccvisu.WriterDataGraphicsVRML
 
ScreenDisplay - Class in ccvisu
Frame implementation for displaying the layout on the screen device.
ScreenDisplay(WriterDataGraphicsDISP, Color, int, float, String, boolean) - Constructor for class ccvisu.ScreenDisplay
Constructor.
ScreenDisplay.MyCanvas - Class in ccvisu
Canvas implementation for displaying the layout on the screen.
ScreenDisplay.MyCanvas(ScreenDisplay, WriterDataGraphicsDISP) - Constructor for class ccvisu.ScreenDisplay.MyCanvas
Constructor.
serialVersionUID - Static variable in class ccvisu.CCVisuGUI
 
serialVersionUID - Static variable in class ccvisu.ClusterManager
 
serialVersionUID - Static variable in class ccvisu.GraphEvent
 
serialVersionUID - Static variable in class ccvisu.ScreenDisplay.MyCanvas
 
serialVersionUID - Static variable in class ccvisu.ScreenDisplay
 
setBackColor(Color) - Method in class ccvisu.WriterDataGraphicsDISP
set backColor
setBlackCircle(boolean) - Method in class ccvisu.WriterDataGraphicsDISP
set blackCircle
setColor(Color) - Method in class ccvisu.Cluster
 
setColorToAll(Color) - Method in class ccvisu.WriterDataGraphicsDISP
Set a color to all vertices Call-back method, invoked from within ScreenDisplay.
setGraphData(GraphData) - Method in class ccvisu.WriterDataGraphicsDISP
Sets the local graph representation (layout) to a new value.
setName(String) - Method in class ccvisu.Cluster
 
setshowEdges(boolean) - Method in class ccvisu.WriterDataGraphicsDISP
set showEdges
showAllLabels() - Method in class ccvisu.WriterDataGraphicsDISP
Show all labels (vertices and edges names).
showEdges - Variable in class ccvisu.WriterDataGraphics
 
showLabel - Variable in class ccvisu.ClusterManager
to choose if the cluster's nodes should be diplayed
showLabel(GraphVertex, boolean) - Method in class ccvisu.WriterDataGraphicsDISP
show/hide the name of a vertex
showName - Variable in class ccvisu.GraphVertex
True if the name shall be annotated in the visualization.
showVertex - Variable in class ccvisu.GraphVertex
True if the vertex shall be displayed.
size() - Method in class ccvisu.Cluster
return the size of the cluster
size - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
sliding - Variable in class ccvisu.ReaderDataGraphCVS
 
STARTS - Static variable in class ccvisu.Cluster
used as mode for the method addPattern
starts - Static variable in class ccvisu.MarkerScript
 
STARTS - Static variable in class ccvisu.MarkerScript
used as mode for pattern interpretation
SVG - Static variable in class ccvisu.CCVisu
Graph layout in SVG format (only output).
svgFilter - Variable in class ccvisu.CCVisuGUI
 

T

test(GraphVertex) - Method in class ccvisu.MarkerScript.ColorCondition
if the vertex correspond to the condition, changes its color
time - Variable in class ccvisu.ReaderDataGraphCVS.Revision
 
timeWindow - Variable in class ccvisu.CCVisuGUI
 
timeWindow - Variable in class ccvisu.ReaderDataGraphCVS
Time-window constant for transaction recovery, in milli-seconds.
toggleNames(Point) - Method in class ccvisu.WriterDataGraphicsDISP
Toggle the showName flag of the vertices and edges at the given position.
tolerance - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
transaction - Variable in class ccvisu.ReaderDataGraphCVS.Revision
The internal number (id) of the change transaction.
txt - Variable in class ccvisu.ClusterManager
 

U

up - Variable in class ccvisu.ClusterManager
to change the position of a cluster in the rendering order
update() - Method in class ccvisu.ScreenDisplay.MyCanvas
update the image used to refresh the screen
updateAndPaint() - Method in class ccvisu.ScreenDisplay.MyCanvas
to use when changes are done and you want to display them
updateWait() - Method in class ccvisu.ScreenDisplay.MyCanvas
write "Refreshing..." in the center of the canvas
user - Variable in class ccvisu.ReaderDataGraphCVS.Revision
 

V

verbosityLevel - Static variable in class ccvisu.CCVisu
 
vertex - Variable in class ccvisu.ReaderDataLAY.LayoutEntry
 
vertexName - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
vertexNameDialog - Variable in class ccvisu.ScreenDisplay
 
vertices - Variable in class ccvisu.GraphData
Maps a vertex id to a GraphVertex.
vertRepu - Variable in class ccvisu.CCVisuGUI
 
visible - Variable in class ccvisu.Cluster
used to know if the cluster should be drawn
visible - Variable in class ccvisu.ClusterManager
to choose if the cluster should be diplayed
VRML - Static variable in class ccvisu.CCVisu
Graph layout in VRML format (only output).
vrmlFilter - Variable in class ccvisu.CCVisuGUI
 

W

w - Variable in class ccvisu.GraphEdgeInt
Edge weight.
w - Variable in class ccvisu.GraphEdgeString
Edge weight.
weight - Variable in class ccvisu.MinimizerBarnesHut.OctTree
Total weight of the contained graph nodes.
white - Static variable in class ccvisu.CCVisu
 
width() - Method in class ccvisu.MinimizerBarnesHut.OctTree
Returns the maximum extension of the octtree.
write(PrintWriter, WriterDataGraphicsDISP) - Static method in class ccvisu.ClusterReaderWriter
write on a stream the informations needed to rebuild the clusters later
write() - Method in class ccvisu.WriterData
Writes the graph or layout data.
write() - Method in class ccvisu.WriterDataGraphics
Writes the layout data in a graphics format.
write - Variable in class ccvisu.WriterDataGraphicsDISP
 
write() - Method in class ccvisu.WriterDataGraphicsDISP
Nothing to do here.
write() - Method in class ccvisu.WriterDataGraphicsSVG
Writes the layout in graphics format SVG.
write() - Method in class ccvisu.WriterDataGraphicsVRML
Writes the layout in graphics format VRML.
write() - Method in class ccvisu.WriterDataLAY
Writes the layout data in text format LAY.
write() - Method in class ccvisu.WriterDataRSF
Writes the graph data in RSF (relational standard format).
writeDISP(int, Graphics, int, int, int, int, float) - Method in class ccvisu.WriterDataGraphicsDISP
Writes the layout on the screen device (DISP output format).
writeEdge(int, int, int, int, int, int, int) - Method in class ccvisu.WriterDataGraphics
Writes an edge.
writeEdge(int, int, int, int, int, int, int) - Method in class ccvisu.WriterDataGraphicsDISP
Writes an edge.
writeEdge(int, int, int, int, int, int, int) - Method in class ccvisu.WriterDataGraphicsSVG
Writes an edge.
writeEdge(int, int, int, int, int, int, int) - Method in class ccvisu.WriterDataGraphicsVRML
Writes an edge.
writeFileLayout(String) - Method in class ccvisu.WriterDataGraphicsDISP
Writes layout to file using an implementation of class WriterData.
writeGraphicsLayout(int) - Method in class ccvisu.WriterDataGraphics
Write graphics layout.
writeGraphicsLayout(int) - Method in class ccvisu.WriterDataGraphicsDISP
Write graphics layout.
writeGraphicsLayout(int) - Method in class ccvisu.WriterDataGraphicsVRML
Write graphics layout.
writer - Static variable in class ccvisu.Cluster
 
writer - Variable in class ccvisu.ScreenDisplay.MyCanvas
 
WriterData - Class in ccvisu
Writer for output data.
WriterData(GraphData) - Constructor for class ccvisu.WriterData
Constructor.
WriterDataGraphics - Class in ccvisu
Writer for graphical output of layout data.
WriterDataGraphics(GraphData, float, int, Color, boolean, boolean, boolean) - Constructor for class ccvisu.WriterDataGraphics
Constructor.
WriterDataGraphicsDISP - Class in ccvisu
Writer for displaying the layout on the screen device.
WriterDataGraphicsDISP(GraphData, float, int, Color, boolean, boolean, boolean, boolean, String, String) - Constructor for class ccvisu.WriterDataGraphicsDISP
Constructor.
WriterDataGraphicsSVG - Class in ccvisu
Writer for layouts in SVG format (Scalable Vector Graphs, XML, W3C).
WriterDataGraphicsSVG(GraphData, PrintWriter, float, int, Color, boolean, boolean, boolean, float, String) - Constructor for class ccvisu.WriterDataGraphicsSVG
Constructor.
WriterDataGraphicsVRML - Class in ccvisu
Writer for layouts in VRML format.
WriterDataGraphicsVRML(GraphData, PrintWriter, float, int, Color, boolean, boolean, boolean, float) - Constructor for class ccvisu.WriterDataGraphicsVRML
Constructor.
WriterDataLAY - Class in ccvisu
Writer for layouts in text format.
WriterDataLAY(GraphData, PrintWriter) - Constructor for class ccvisu.WriterDataLAY
 
WriterDataRSF - Class in ccvisu
Writer for co-change graphs in RSF format.
WriterDataRSF(GraphData, PrintWriter) - Constructor for class ccvisu.WriterDataRSF
 
writeVertex(GraphVertex, int, int, int, int) - Method in class ccvisu.WriterDataGraphics
Writes a vertex.
writeVertex(GraphVertex, int, int, int, int) - Method in class ccvisu.WriterDataGraphicsDISP
Writes a vertex on screen.
writeVertex(GraphVertex, int, int, int, int) - Method in class ccvisu.WriterDataGraphicsSVG
Writes a vertex in SVG format.
writeVertex(GraphVertex, int, int, int, int) - Method in class ccvisu.WriterDataGraphicsVRML
Writes a vertex in VRML format.

X

x - Variable in class ccvisu.Cluster
x-coordinate of the barycenter
x - Variable in class ccvisu.GraphEdgeInt
Source vertex of edge.
x - Variable in class ccvisu.GraphEdgeString
Source vertex of edge.
xMap - Variable in class ccvisu.WriterDataGraphicsDISP
 
xSize - Variable in class ccvisu.WriterDataGraphicsDISP
 

Y

y - Variable in class ccvisu.Cluster
y-coordinate of the barycenter
y - Variable in class ccvisu.GraphEdgeInt
Target vertex of edge.
y - Variable in class ccvisu.GraphEdgeString
Target vertex of edge.
yellow - Static variable in class ccvisu.CCVisu
 
yMap - Variable in class ccvisu.WriterDataGraphicsDISP
 
ySize - Variable in class ccvisu.WriterDataGraphicsDISP
 

Z

z - Variable in class ccvisu.Cluster
z-coordinate of the barycenter

A B C D E F G H I K L M N O P R S T U V W X Y Z